getTranscriptIdsForOneUTRVariant: Find all the ensembl_transcript_id for a variant which fall...

In utr.annotation: Annotate Variants in the Untranslated Regions

Description

getTranscriptIdsForOneUTRVariant find transcripts if a variant fall in their specified region

Usage

getTranscriptIdsForOneUTRVariant(variant, transcriptRegions, start, end)

Arguments

variant	one row of variants table
transcriptRegions	transcripts structure table from ensembl
start	column name of the start region in the transcriptRegions table
end	column name of the end region in the transcriptRegions table

Value

A string representing a list of containing ensembl_transcript_id and collapsed with ;

utr.annotation documentation built on Aug. 23, 2021, 9:06 a.m.