Description Usage Arguments Details Value
getTranscriptIdsForOneTSSKozakVariants
get the ensembl_transcript_id and kozak_positions for one variant in TSS Kozak region (8nt) [AG]..AUGG.
1 | getTranscriptIdsForOneTSSKozakVariant(variant, transcriptRegions)
|
variant |
one variant |
transcriptRegions |
transcripts structure table from ensembl |
Get all transcripts and extract their checkRegion's coordinates. For each transcript, check if the mutation Pos is within the region, if so, add that transcript's ensembl_transcript_id. If the mutation Pos is within multiple transcripts checkRegions, the transcripts ids are concatenate into one string with ";".
A data table containing two columns: ensembl_transcript_id (id of the transcripts for each variant which its mutation Pos is within TSS Kozak regions) kozak_positions (positions of each nucleotide in Kozak sequence)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.