readVariantData: Read variant file in CSV format
In utr.annotation: Annotate Variants in the Untranslated Regions
Description
Usage
Arguments
Value
Description
readVariantData Read variant file in CSV / VCF format, check if it contains required columns for UTR annotation, split rows if there're collapsed columns (items are separated by ,), and remove rows containing NAs in Chr, Pos, Ref or Alt
Usage
1
readVariantData(variantFile, format = "csv")
Arguments
variantFile
A varian file in CSV or VCF format
format
File format, csv or vcf. The default file format is csv
Value
A data.table containing all variants if variant file is valid
utr.annotation documentation built on Aug. 23, 2021, 9:06 a.m.
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Description Usage Arguments Value
Description
readVariantData Read variant file in CSV / VCF format, check if it contains required columns for UTR annotation, split rows if there're collapsed columns (items are separated by ,), and remove rows containing NAs in Chr, Pos, Ref or Alt
Usage
1 | readVariantData(variantFile, format = "csv")
|
Arguments
variantFile |
A varian file in CSV or VCF format |
format |
File format, csv or vcf. The default file format is csv |
Value
A data.table containing all variants if variant file is valid
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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