getKozakScore: Calculate the Kozak score for each Kozak sequence, and...
In utr.annotation: Annotate Variants in the Untranslated Regions
Description
Usage
Arguments
Value
Description
Calculate the Kozak score for each Kozak sequence, and concatenate the numbers with ",".
Usage
1
getKozakScore(variantsTable, kozakSeqs, kozakPWM)
Arguments
variantsTable
variants table
kozakSeqs
the column name of the kozak sequences
kozakPWM
Kozak PWM output from consensusMatrix() and PWM()
Value
a list containing scores for the kozak sequences. Can be used to add new column to the variants table.
utr.annotation documentation built on Aug. 23, 2021, 9:06 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Calculate the Kozak score for each Kozak sequence, and concatenate the numbers with ",".
Usage
1 | getKozakScore(variantsTable, kozakSeqs, kozakPWM)
|
Arguments
variantsTable |
variants table |
kozakSeqs |
the column name of the kozak sequences |
kozakPWM |
Kozak PWM output from consensusMatrix() and PWM() |
Value
a list containing scores for the kozak sequences. Can be used to add new column to the variants table.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.