getSeqTable: Get UTR sequences of a list of transcripts
In utr.annotation: Annotate Variants in the Untranslated Regions

getSeqTable will query 5' UTR or 3' UTR sequences of a list of transcripts from Ensembl database

getSeqTable(
  transcriptIds,
  seqType,
  species,
  ensemblVersion,
  dataDir,
  downstream = NULL,
  upstream = NULL
)

`transcriptIds`	a list of Ensembl transcript ids
`seqType`	Either '5utr' or '3utr'. 5utr' for 5' UTR sequence, '3utr' for 3' UTR sequences
`species`	human or mouse
`dataDir`	directory to store DB information

sequences table containing columns: ensembl_transcript_id and seq

utr.annotation documentation built on Aug. 23, 2021, 9:06 a.m.

utr.annotation index

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