get_conservation_scores: Get conservation scores for variants
In utr.annotation: Annotate Variants in the Untranslated Regions
Description
Usage
Arguments
Value
View source: R/conservation_scores.R
Description
Get conservation scores for variants
Usage
1
get_conservation_scores(variantsTable, conservationBwPath)
Arguments
variantsTable
A variant table, positions are 1-based
conservationBwPath
The path of the bigWig conservation track file download from UCSC Genome Browser
Value
A vector of strings, which are conservation scores of input variants. If a variant reference sequence has more than 1 nucleotide, the conservation scores of all its positions will be concatenated with ";".
utr.annotation documentation built on Aug. 23, 2021, 9:06 a.m.
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Description Usage Arguments Value
View source: R/conservation_scores.R
Description
Get conservation scores for variants
Usage
1 | get_conservation_scores(variantsTable, conservationBwPath)
|
Arguments
variantsTable |
A variant table, positions are 1-based |
conservationBwPath |
The path of the bigWig conservation track file download from UCSC Genome Browser |
Value
A vector of strings, which are conservation scores of input variants. If a variant reference sequence has more than 1 nucleotide, the conservation scores of all its positions will be concatenated with ";".
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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