Description Usage Arguments Value
Get the Kozak sequence in TSS region for transcripts in transcriptIdColumn.
1 | getTSSKozak(variantsTable, utr5SeqTable, codingSeqTable, transcriptIdColumn)
|
variantsTable |
variants table |
utr5SeqTable |
5' UTR sequence table from Ensembl DB. Have two columns: ensembl_transcript_id and seq |
codingSeqTable |
coding sequence table from Ensembl DB. Have two columns: ensembl_transcript_id and seq |
transcriptIdColumn |
the name of the transcript id column for the codon region |
A list containing TSS Kozak sequences (NA if the transcript id in that row is NA). If transcriptIdColumn does not exist in the variantsTable, return NA
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