Description Usage Arguments Value
View source: R/get_genome_db.R
getTranscriptIdsOneVariant
Get transcript ids that overlap with one variant
1 | getTranscriptIdsOneVariant(variant, species, ensemblVersion, dataDir)
|
variant |
one variant |
species |
human or mouse |
ensemblVersion |
Ensembl database version |
dataDir |
path to store database information |
protein coding transcript ids that overlap with the variant, if more than one transcripts overlap with the variant, they are concatenated with ";", if no transcript found, return NA.
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