getTranscriptIdsOneVariant: Search the db to find protein coding transcript ids that...
In utr.annotation: Annotate Variants in the Untranslated Regions
Description
Usage
Arguments
Value
View source: R/get_genome_db.R
Description
getTranscriptIdsOneVariant Get transcript ids that overlap with one variant
Usage
1
getTranscriptIdsOneVariant(variant, species, ensemblVersion, dataDir)
Arguments
variant
one variant
species
human or mouse
ensemblVersion
Ensembl database version
dataDir
path to store database information
Value
protein coding transcript ids that overlap with the variant, if more than one transcripts overlap with the variant, they are concatenated with ";", if no transcript found, return NA.
utr.annotation documentation built on Aug. 23, 2021, 9:06 a.m.
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Description Usage Arguments Value
View source: R/get_genome_db.R
Description
getTranscriptIdsOneVariant Get transcript ids that overlap with one variant
Usage
1 | getTranscriptIdsOneVariant(variant, species, ensemblVersion, dataDir)
|
Arguments
variant |
one variant |
species |
human or mouse |
ensemblVersion |
Ensembl database version |
dataDir |
path to store database information |
Value
protein coding transcript ids that overlap with the variant, if more than one transcripts overlap with the variant, they are concatenated with ";", if no transcript found, return NA.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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