Description Usage Arguments Value
getTranscriptIdsForUTRVariants
find transcripts if a variant fall in their specified region and return all transcripts id for each variant in the variant table
1 | getTranscriptIdsForUTRVariants(variantsTable, transcriptRegions, checkRegion)
|
variantsTable |
variants table |
transcriptRegions |
transcripts structure table from Ensembl |
checkRegion |
check if a transcript within a region: utr5 or utr3 or cds |
A list containing ensembl_transcript_id of each variant which its mutation Pos is within those transcripts checkRegion.
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