predictMRL: Get the 100nt 5' UTR sequence upstream of start codon for...
In utr.annotation: Annotate Variants in the Untranslated Regions
Description
Usage
Arguments
Value
View source: R/utr5_mrl_prediction.R
Description
predictMRL Get the 100nt 5' UTR sequence upstream of start codon for transcripts in transcriptIdColumn and predict their MRL
Usage
1
predictMRL(variantsTable, seqTable, transcriptIdColumn)
Arguments
variantsTable
variants table
seqTable
corresponding 5' UTR sequence table from Ensembl DB. Have two columns: ensembl_transcript_id and seq
transcriptIdColumn
the name of the transcript id column
Value
A list predicted MRL (NA if the transcript id in that row is NA). If transcriptIdColumn does not exist in the variantsTable, return NA
utr.annotation documentation built on Aug. 23, 2021, 9:06 a.m.
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Description Usage Arguments Value
View source: R/utr5_mrl_prediction.R
Description
predictMRL Get the 100nt 5' UTR sequence upstream of start codon for transcripts in transcriptIdColumn and predict their MRL
Usage
1 | predictMRL(variantsTable, seqTable, transcriptIdColumn)
|
Arguments
variantsTable |
variants table |
seqTable |
corresponding 5' UTR sequence table from Ensembl DB. Have two columns: ensembl_transcript_id and seq |
transcriptIdColumn |
the name of the transcript id column |
Value
A list predicted MRL (NA if the transcript id in that row is NA). If transcriptIdColumn does not exist in the variantsTable, return NA
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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