getTranscriptIds: Get protein coding transcript ids that overlap with each...
In utr.annotation: Annotate Variants in the Untranslated Regions
Description
Usage
Arguments
Value
View source: R/get_genome_db.R
Description
getTranscriptIds Get transcript ids that overlap with each variant in the variant table
Usage
1
getTranscriptIds(variantsTable, species, ensemblVersion, dataDir)
Arguments
variantsTable
variant table
species
human or mouse
ensemblVersion
Ensembl database version
dataDir
path to store database information
Value
a list of protein coding transcript ids that overlap with each variant, if more than one transcripts overlap with a variant, they are concatenated with ";"
utr.annotation documentation built on Aug. 23, 2021, 9:06 a.m.
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Description Usage Arguments Value
View source: R/get_genome_db.R
Description
getTranscriptIds Get transcript ids that overlap with each variant in the variant table
Usage
1 | getTranscriptIds(variantsTable, species, ensemblVersion, dataDir)
|
Arguments
variantsTable |
variant table |
species |
human or mouse |
ensemblVersion |
Ensembl database version |
dataDir |
path to store database information |
Value
a list of protein coding transcript ids that overlap with each variant, if more than one transcripts overlap with a variant, they are concatenated with ";"
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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