Description Usage Arguments Value
View source: R/get_genome_db.R
getTranscriptIds
Get transcript ids that overlap with each variant in the variant table
1 | getTranscriptIds(variantsTable, species, ensemblVersion, dataDir)
|
variantsTable |
variant table |
species |
human or mouse |
ensemblVersion |
Ensembl database version |
dataDir |
path to store database information |
a list of protein coding transcript ids that overlap with each variant, if more than one transcripts overlap with a variant, they are concatenated with ";"
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