getKozakScoreOneVariant: Calculate the Kozak score for each Kozak sequence, and...
In utr.annotation: Annotate Variants in the Untranslated Regions
Description
Usage
Arguments
Value
Description
Calculate the Kozak score for each Kozak sequence, and concatenate the numbers with "," for one variant
Usage
1
getKozakScoreOneVariant(variant, kozakSeqs, kozakPWM)
Arguments
variant
variant info
kozakSeqs
the column name of the kozak sequences
kozakPWM
Kozak PWM output from consensusMatrix() and PWM()
Value
a string concatenated scores for the kozak sequences.
utr.annotation documentation built on Aug. 23, 2021, 9:06 a.m.
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Description Usage Arguments Value
Description
Calculate the Kozak score for each Kozak sequence, and concatenate the numbers with "," for one variant
Usage
1 | getKozakScoreOneVariant(variant, kozakSeqs, kozakPWM)
|
Arguments
variant |
variant info |
kozakSeqs |
the column name of the kozak sequences |
kozakPWM |
Kozak PWM output from consensusMatrix() and PWM() |
Value
a string concatenated scores for the kozak sequences.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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