getTrasncriptsRegions: Get information on transcript regions, UTRs regions, coding...
In utr.annotation: Annotate Variants in the Untranslated Regions
Description
Usage
Arguments
Value
View source: R/get_genome_db.R
Description
getTrasncriptsRegions query "ensembl_gene_id", "ensembl_transcript_id", "transcript_start", "transcript_end", "5_utr_start", "5_utr_end", "3_utr_start", "3_utr_end", "genomic_coding_start", "genomic_coding_end", "gene_biotype", "strand" from Ensembl database
Usage
1
getTrasncriptsRegions(transcriptIds, species, ensemblVersion, dataDir)
Arguments
transcriptIds
Ensembl transcript ids
species
human or mouse
ensemblVersion
Ensembl database version
dataDir
directory to store DB information
Value
transcript structure table containing "ensembl_gene_id", "ensembl_transcript_id", "transcript_start", "transcript_end", "5_utr_start", "5_utr_end", "3_utr_start", "3_utr_end", "genomic_coding_start", "genomic_coding_end","gene_biotype", "strand"
utr.annotation documentation built on Aug. 23, 2021, 9:06 a.m.
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Description Usage Arguments Value
View source: R/get_genome_db.R
Description
getTrasncriptsRegions query "ensembl_gene_id", "ensembl_transcript_id", "transcript_start", "transcript_end", "5_utr_start", "5_utr_end", "3_utr_start", "3_utr_end", "genomic_coding_start", "genomic_coding_end", "gene_biotype", "strand" from Ensembl database
Usage
1 | getTrasncriptsRegions(transcriptIds, species, ensemblVersion, dataDir)
|
Arguments
transcriptIds |
Ensembl transcript ids |
species |
human or mouse |
ensemblVersion |
Ensembl database version |
dataDir |
directory to store DB information |
Value
transcript structure table containing "ensembl_gene_id", "ensembl_transcript_id", "transcript_start", "transcript_end", "5_utr_start", "5_utr_end", "3_utr_start", "3_utr_end", "genomic_coding_start", "genomic_coding_end","gene_biotype", "strand"
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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