predictMRLInAltOneVariant: Predict altered MRL for one variant

In utr.annotation: Annotate Variants in the Untranslated Regions

Description

Predict altered MRL for one variant

Usage

predictMRLInAltOneVariant(
  variant,
  seqTable,
  transcriptsTable,
  transcriptIdColumn,
  model
)

Arguments

variant	A variant
seqTable	corresponding 5' UTR sequence table from Ensembl DB. Have two columns: ensembl_transcript_id and seq
transcriptsTable	transcripts structure table from ensembl with start and end columns for start and end coordinates of the 5' UTR
transcriptIdColumn	the name of the transcript id column
model	MRL prediction model

Value

MRL prediction of altered 5' UTR for the input variant

utr.annotation documentation built on Aug. 23, 2021, 9:06 a.m.