Description Usage Arguments Value
View source: R/utr5_mrl_prediction.R
Predict altered MRL for one variant
1 2 3 4 5 6 7 | predictMRLInAltOneVariant(
variant,
seqTable,
transcriptsTable,
transcriptIdColumn,
model
)
|
variant |
A variant |
seqTable |
corresponding 5' UTR sequence table from Ensembl DB. Have two columns: ensembl_transcript_id and seq |
transcriptsTable |
transcripts structure table from ensembl with start and end columns for start and end coordinates of the 5' UTR |
transcriptIdColumn |
the name of the transcript id column |
model |
MRL prediction model |
MRL prediction of altered 5' UTR for the input variant
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