addDimRedTaxaColors: Add colors for taxa in dimension reduction plot

In BIONF/PhyloProfile: PhyloProfile

Add colors for taxa in dimension reduction plot

Description

Add colors for taxa in dimension reduction plot

Usage

addDimRedTaxaColors(plotDf = NULL, colorPalette = "Set2",
    highlightTaxa = NULL)

Arguments

plotDf	data for dimension reduction plot
colorPalette	color palette. Default: "Set2"
highlightTaxa	list of taxa to be highlighted

Value

A dataframe for dimension reduction plot with an additional column for the assigned color to each taxon

Author(s)

Vinh Tran [e-mail]

See Also

prepareDimRedData, dimReduction, createDimRedPlotData

Examples

rawInput <- system.file(
   "extdata", "test.main.long", package = "PhyloProfile", mustWork = TRUE
)
longDf <- createLongMatrix(rawInput)
data4dimRed <- prepareDimRedData(longDf, "phylum")
dimRedCoord <- dimReduction(data4dimRed)
plotDf <- createDimRedPlotData(dimRedCoord, data4dimRed)
PhyloProfile:::addDimRedTaxaColors(plotDf, colorPalette = "Set2")

BIONF/PhyloProfile documentation built on Dec. 18, 2024, 7:33 a.m.