getDataForOneOma: Get OMA info for a query protein and its orthologs
In BIONF/PhyloProfile: PhyloProfile
View source: R/getOmaBrowser.R
getDataForOneOma R Documentation
Get OMA info for a query protein and its orthologs
Description
Get taxonomy IDs, sequences, length and annotations for an OMA
orthologous group (or OMA HOG).
Usage
getDataForOneOma(seedID = NULL, orthoType = "OG")
Arguments
seedID
OMA protein ID
orthoType
type of OMA orthologs ("OG" or "HOG"). Default = "OG".
Value
Data frame contains info for all sequences of the input OMA group
(or HOG). That info contains the protein IDs, taxonomy IDs, sequences,
lengths, domain annotations (tab delimited) and the corresponding seed ID.
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
Examples
### Uncomment the following line to run the function
# getDataForOneOma("HUMAN29397", "OG")
BIONF/PhyloProfile documentation built on Nov. 7, 2024, 8:31 p.m.
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View source: R/getOmaBrowser.R
| getDataForOneOma | R Documentation |
Get OMA info for a query protein and its orthologs
Description
Get taxonomy IDs, sequences, length and annotations for an OMA orthologous group (or OMA HOG).
Usage
getDataForOneOma(seedID = NULL, orthoType = "OG")
Arguments
seedID |
OMA protein ID |
orthoType |
type of OMA orthologs ("OG" or "HOG"). Default = "OG". |
Value
Data frame contains info for all sequences of the input OMA group (or HOG). That info contains the protein IDs, taxonomy IDs, sequences, lengths, domain annotations (tab delimited) and the corresponding seed ID.
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
Examples
### Uncomment the following line to run the function
# getDataForOneOma("HUMAN29397", "OG")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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