dataMainPlot: Create data for main profile plot
In BIONF/PhyloProfile: PhyloProfile
View source: R/createProfilePlot.R
dataMainPlot R Documentation
Create data for main profile plot
Description
Create data for main profile plot
Usage
dataMainPlot(dataHeat = NULL)
Arguments
dataHeat
a data frame contains processed profiles (see
?fullProcessedProfile, ?filterProfileData)
Value
A dataframe for plotting the phylogenetic profile, containing seed
protein IDs (geneID), ortholog IDs (orthoID) together with their ncbi
taxonomy IDs (ncbiID and abbrName), full names (fullName), indexed supertaxa
(supertaxon), values for additional variables (var1, var2) and the aggregated
values of those additional variables for each supertaxon (mVar1, mVar2),
number of original and filtered co-orthologs in each supertaxon (paralog and
paralogNew), number of species in each supertaxon (numberSpec) and the
species that have orthologs in each supertaxon (presSpec).
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
See Also
filterProfileData
Examples
data("finalProcessedProfile", package="PhyloProfile")
dataMainPlot(finalProcessedProfile)
BIONF/PhyloProfile documentation built on Dec. 18, 2024, 7:33 a.m.
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View source: R/createProfilePlot.R
| dataMainPlot | R Documentation |
Create data for main profile plot
Description
Create data for main profile plot
Usage
dataMainPlot(dataHeat = NULL)
Arguments
dataHeat |
a data frame contains processed profiles (see ?fullProcessedProfile, ?filterProfileData) |
Value
A dataframe for plotting the phylogenetic profile, containing seed protein IDs (geneID), ortholog IDs (orthoID) together with their ncbi taxonomy IDs (ncbiID and abbrName), full names (fullName), indexed supertaxa (supertaxon), values for additional variables (var1, var2) and the aggregated values of those additional variables for each supertaxon (mVar1, mVar2), number of original and filtered co-orthologs in each supertaxon (paralog and paralogNew), number of species in each supertaxon (numberSpec) and the species that have orthologs in each supertaxon (presSpec).
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
See Also
filterProfileData
Examples
data("finalProcessedProfile", package="PhyloProfile")
dataMainPlot(finalProcessedProfile)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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