getFastaFromFile | R Documentation |
Get fasta sequences from main input file in multi-fasta format
getFastaFromFile(seqIDs = NULL, concatFasta = NULL)
seqIDs |
list of sequences IDs. Set seqIDs = "all" if you want to get all fasta sequences from the concatenated input fasta file. |
concatFasta |
input concatenated fasta file. |
A dataframe with one column contains sequences in fasta format.
Vinh Tran tran@bio.uni-frankfurt.de
concatFasta <- system.file(
"extdata", "fastaFiles/concatenatedFile.fa",
package = "PhyloProfile", mustWork = TRUE
)
getFastaFromFasInput("all", concatFasta)
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