getFastaFromFile: Get fasta sequences from main input file in multi-fasta...
In BIONF/PhyloProfile: PhyloProfile

getFastaFromFile

R Documentation

Get fasta sequences from main input file in multi-fasta format

Description

Get fasta sequences from main input file in multi-fasta format

Usage

getFastaFromFile(seqIDs = NULL, concatFasta = NULL)

Arguments

`seqIDs`	list of sequences IDs. Set seqIDs = "all" if you want to get all fasta sequences from the concatenated input fasta file.
`concatFasta`	input concatenated fasta file.

Value

A dataframe with one column contains sequences in fasta format.

Author(s)

Vinh Tran tran@bio.uni-frankfurt.de

Examples

concatFasta <- system.file(
    "extdata", "fastaFiles/concatenatedFile.fa",
    package = "PhyloProfile", mustWork = TRUE
)
getFastaFromFasInput("all", concatFasta)

BIONF/PhyloProfile documentation built on May 5, 2024, 11:23 a.m.