getDendrogram: Plot dendrogram tree

In BIONF/PhyloProfile: PhyloProfile

Plot dendrogram tree

Description

Plot dendrogram tree

Usage

getDendrogram(dd = NULL)

Arguments

dd	dendrogram object (see ?clusterDataDend)

Value

A dendrogram plot for the genes in the input phylogenetic profiles.

Author(s)

Vinh Tran [e-mail]

See Also

clusterDataDend

Examples

data("finalProcessedProfile", package="PhyloProfile")
data <- finalProcessedProfile
profileType <- "binary"
profiles <- getDataClustering(
    data, profileType, var1AggregateBy, var2AggregateBy)
distMethod <- "mutualInformation"
distanceMatrix <- getDistanceMatrix(profiles, distMethod)
clusterMethod <- "complete"
dd <- clusterDataDend(as.dist(distanceMatrix), clusterMethod)
getDendrogram(dd)

BIONF/PhyloProfile documentation built on Dec. 18, 2024, 7:33 a.m.