createVariableDistributionDataSubset: Create data for additional variable distribution (for a...

In BIONF/PhyloProfile: PhyloProfile

Create data for additional variable distribution (for a subset data)

Description

Create data for additional variable distribution (for a subset data)

Usage

createVariableDistributionDataSubset(fullProfileData,
    distributionData, selectedGenes, selectedTaxa)

Arguments

fullProfileData	dataframe contains the full processed profiles (see ?fullProcessedProfile, ?filterProfileData or ?fromInputToProfile)
distributionData	dataframe contains the full distribution data (see ?createVariableDistributionData)
selectedGenes	list of genes of interest. Default = "all".
selectedTaxa	list of taxa of interest Default = "all".

Value

A dataframe for analysing the distribution of the additional variable(s) for a subset of genes and/or taxa containing the protein (ortholog) IDs and the values of their variables (var1 and var2).

Author(s)

Vinh Tran [e-mail]

See Also

parseInfoProfile, createVariableDistributionData, fullProcessedProfile, mainLongRaw

Examples

data("fullProcessedProfile", package="PhyloProfile")
data("mainLongRaw", package="PhyloProfile")
distributionData <- createVariableDistributionData(
    mainLongRaw, c(0, 1), c(0.5, 1)
)
selectedGenes <- "100136at6656"
selectedTaxa <- c("Mammalia", "Saccharomycetes", "Insecta")
createVariableDistributionDataSubset(
    fullProcessedProfile,
    distributionData,
    selectedGenes,
    selectedTaxa
)

BIONF/PhyloProfile documentation built on Dec. 18, 2024, 7:33 a.m.