fastaParser: Parse multi-fasta input file

In BIONF/PhyloProfile: PhyloProfile

Parse multi-fasta input file

Description

Parse multi-fasta input file

Usage

fastaParser(inputFile = NULL)

Arguments

inputFile

input multiple fasta file. Check extdata/test.main.fasta or https://github.com/BIONF/PhyloProfile/wiki/Input-Data#multi-fasta-format for the supported FASTA header.

Value

A data frame of input data in long-format containing seed gene IDs ( or orthologous group IDs), their orthologous proteins together with the corresponding taxonomy IDs and values of (up to) two additional variables.

Author(s)

Vinh Tran [e-mail]

Examples

inputFile <- system.file(
    "extdata", "test.main.fasta", package = "PhyloProfile", mustWork = TRUE
)
fastaParser(inputFile)

BIONF/PhyloProfile documentation built on Dec. 23, 2024, 4:23 a.m.