finalProcessedProfile: An example of a final processed & filtered phylogenetic...

In BIONF/PhyloProfile: PhyloProfile

An example of a final processed & filtered phylogenetic profile

Description

An example of a final processed & filtered phylogenetic profile

Usage

data(finalProcessedProfile)

Format

Dataframe

Value

A data frame with 88 rows and 11 variables:

• geneID Seed or ortholog group ID, e.g. "100136at6656"

• supertaxon Supertaxon name together with its ordered index, e.g. "1001_Mammalia"

• supertaxonID Supertaxon ID (only different than ncbiID in case working with higher taxonomy rank than input's). e.g. "40674"

• var1 First additional variable

• presSpec The percentage of species presenting in each supertaxon

• category "cat"

• orthoID Ortholog ID, e.g. "100136at6656|RAT@10116@1|G3V7R8|1"

• var2 Second additional variable

• paralog Number of co-orthologs in the current taxon

• presentTaxa Number of taxa that have ortho in each supertaxon

• totalTaxa Total number of taxa in each supertaxon

BIONF/PhyloProfile documentation built on Dec. 18, 2024, 7:33 a.m.