createLongMatrix: Create a long matrix format for all kinds of input...

In BIONF/PhyloProfile: PhyloProfile

Create a long matrix format for all kinds of input phylogenetic profiles

Description

Create a long matrix format for all kinds of input phylogenetic profiles

Usage

createLongMatrix(inputFile = NULL)

Arguments

inputFile

input profile file in orthoXML, multiple FASTA, tab-delimited matrix format (wide or long).

Value

A data frame of input data in long-format containing seed gene IDs ( or orthologous group IDs), their orthologous proteins together with the corresponding taxonomy IDs and values of (up to) two additional variables.

Author(s)

Vinh Tran [e-mail]

See Also

xmlParser, fastaParser, wideToLong

Examples

inputFile <- system.file(
    "extdata", "test.main.wide", package = "PhyloProfile", mustWork = TRUE
)
createLongMatrix(inputFile)

BIONF/PhyloProfile documentation built on Dec. 23, 2024, 4:23 a.m.