createProfileFromOma: Create a phylogenetic profile from a raw OMA dataframe
In BIONF/PhyloProfile: PhyloProfile
View source: R/getOmaBrowser.R
createProfileFromOma R Documentation
Create a phylogenetic profile from a raw OMA dataframe
Description
Create a phylogenetic profile from a raw OMA dataframe
Usage
createProfileFromOma(finalOmaDf = NULL)
Arguments
finalOmaDf
raw OMA data for a list of proteins (see ?getDataForOneOma)
Value
Dataframe of the phylogenetic profiles in long format, which
contains the seed protein IDs, their orthologous proteins and the
corresponding taxononmy IDs of the orthologs.
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
See Also
getDataForOneOma
Examples
### Uncomment the following lines to run the function
# omaData <- getDataForOneOma("HUMAN29397", "OG")
# createProfileFromOma(omaData)
BIONF/PhyloProfile documentation built on Dec. 18, 2024, 7:33 a.m.
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View source: R/getOmaBrowser.R
| createProfileFromOma | R Documentation |
Create a phylogenetic profile from a raw OMA dataframe
Description
Create a phylogenetic profile from a raw OMA dataframe
Usage
createProfileFromOma(finalOmaDf = NULL)
Arguments
finalOmaDf |
raw OMA data for a list of proteins (see ?getDataForOneOma) |
Value
Dataframe of the phylogenetic profiles in long format, which contains the seed protein IDs, their orthologous proteins and the corresponding taxononmy IDs of the orthologs.
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
See Also
getDataForOneOma
Examples
### Uncomment the following lines to run the function
# omaData <- getDataForOneOma("HUMAN29397", "OG")
# createProfileFromOma(omaData)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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