createProfileFromOma: Create a phylogenetic profile from a raw OMA dataframe

In BIONF/PhyloProfile: PhyloProfile

Create a phylogenetic profile from a raw OMA dataframe

Description

Create a phylogenetic profile from a raw OMA dataframe

Usage

createProfileFromOma(finalOmaDf = NULL)

Arguments

finalOmaDf

raw OMA data for a list of proteins (see ?getDataForOneOma)

Value

Dataframe of the phylogenetic profiles in long format, which contains the seed protein IDs, their orthologous proteins and the corresponding taxononmy IDs of the orthologs.

Author(s)

Vinh Tran [e-mail]

See Also

getDataForOneOma

Examples

### Uncomment the following lines to run the function
# omaData <- getDataForOneOma("HUMAN29397", "OG")
# createProfileFromOma(omaData)

BIONF/PhyloProfile documentation built on Nov. 7, 2024, 8:31 p.m.