clusterDataDend: Create a hclust object from the distance matrix

In BIONF/PhyloProfile: PhyloProfile

Create a hclust object from the distance matrix

Description

Create a hclust object from the distance matrix

Usage

clusterDataDend(distanceMatrix = NULL, clusterMethod = "complete")

Arguments

distanceMatrix	calculated distance matrix (see ?getDistanceMatrix)
clusterMethod	clustering method ("single", "complete", "average" for UPGMA, "mcquitty" for WPGMA, "median" for WPGMC, or "centroid" for UPGMC). Default = "complete".

Value

An object class hclust generated based on input distance matrix and a selected clustering method.

Author(s)

Vinh Tran [e-mail]

See Also

getDataClustering, getDistanceMatrix, hclust

Examples

data("finalProcessedProfile", package="PhyloProfile")
data <- finalProcessedProfile
profileType <- "binary"
profiles <- getDataClustering(
    data, profileType, var1AggregateBy, var2AggregateBy)
distMethod <- "mutualInformation"
distanceMatrix <- getDistanceMatrix(profiles, distMethod)
clusterMethod <- "complete"
clusterDataDend(distanceMatrix, clusterMethod)

BIONF/PhyloProfile documentation built on April 14, 2024, 10:39 p.m.