createPercentageDistributionData: Create data for percentage present taxa distribution

In BIONF/PhyloProfile: PhyloProfile

Create data for percentage present taxa distribution

Description

Create data for percentage present taxa distribution

Usage

createPercentageDistributionData(inputData = NULL, rankName = NULL,
    taxDB = NULL)

Arguments

inputData	dataframe contains raw input data in long format (see ?mainLongRaw)
rankName	name of the working taxonomy rank (e.g. "species", "family")
taxDB	Path to the taxonomy DB files

Value

A dataframe for analysing the distribution of the percentage of species in the selected supertaxa, containing the seed protein IDs, percentage of their orthologs in each supertaxon and the corresponding supertaxon names.

Author(s)

Vinh Tran [e-mail]

See Also

mainLongRaw

Examples

data("mainLongRaw", package="PhyloProfile")
createPercentageDistributionData(mainLongRaw, "class")

BIONF/PhyloProfile documentation built on Sept. 4, 2024, 11:45 a.m.