dataVarDistTaxGroup: Create data for variable distribution comparison plot

In BIONF/PhyloProfile: PhyloProfile

Create data for variable distribution comparison plot

Description

Create data for plotting the distribution comparison between 2 groups of taxa for a selected gene.

Usage

dataVarDistTaxGroup(data, inGroup, gene, variable)

Arguments

data	input phylogenetic profile in long format (see ?mainLongRaw and ?createLongMatrix)
inGroup	ID list of in-group taxa (e.g. "ncbi1234")
gene	ID of gene that need to be plotted the distribution comparison between in- and out-group taxa.
variable	var1 or c(var1, var2)

Value

Dataframe containing list of values for all available variables for the selected genes in in-group and out-group taxa (max. 3 columns).

Author(s)

Vinh Tran ([e-mail])

See Also

createLongMatrix

Examples

data("mainLongRaw", package="PhyloProfile")
data <- mainLongRaw
inGroup <- c("ncbi9606", "ncbi10116")
variable <- colnames(data)[c(4, 5)]
dataVarDistTaxGroup(data, inGroup, "101621at6656", variable)

BIONF/PhyloProfile documentation built on Dec. 18, 2024, 7:33 a.m.