API for BIONF/PhyloProfile
PhyloProfile

Global functions
calcPresSpec Man page Source code
checkInputValidity Man page Source code
checkNewick Man page Source code
checkOmaID Man page Source code
clusterDataDend Man page Source code
compareMedianTaxonGroups Man page Source code
compareTaxonGroups Man page Source code
createArchiPlot Man page Source code
createGeneAgePlot Man page
createLongMatrix Man page Source code
createPercentageDistributionData Man page Source code
createProfileFromOma Man page Source code
createRootedTree Man page Source code
createVarDistPlot Man page Source code
createVariableDistributionData Man page Source code
createVariableDistributionDataSubset Man page Source code
dataCustomizedPlot Man page Source code
dataFeatureTaxGroup Man page Source code
dataMainPlot Man page Source code
dataVarDistTaxGroup Man page Source code
distributionTest Man page Source code
estimateGeneAge Man page Source code
fastaParser Man page Source code
featureDistTaxPlot Man page Source code
filterProfileData Man page Source code
finalProcessedProfile Man page
fromInputToProfile Man page Source code
fullProcessedProfile Man page
geneAgePlotDf Man page Source code
generateSinglePlot Man page Source code
getAllDomainsOma Man page Source code
getAllFastaOma Man page Source code
getCommonAncestor Man page Source code
getCoreGene Man page Source code
getDataClustering Man page Source code
getDataForOneOma Man page Source code
getDendrogram Man page Source code
getDistanceMatrix Man page Source code
getDomainFolder Man page Source code
getFastaFromFasInput Man page Source code
getFastaFromFile Man page Source code
getFastaFromFolder Man page Source code
getIDsRank Man page Source code
getInputTaxaID Man page Source code
getInputTaxaName Man page Source code
getNameList Man page Source code
getOmaDataForOneOrtholog Man page Source code
getOmaDomainFromURL Man page Source code
getOmaMembers Man page Source code
getQualColForVector Man page Source code
getSelectedFastaOma Man page Source code
getSelectedTaxonNames Man page Source code
getTaxonomyInfo Man page Source code
getTaxonomyMatrix Man page Source code
getTaxonomyRanks Man page Source code
gridArrangeSharedLegend Man page Source code
heatmapPlotting Man page Source code
highlightProfilePlot Man page Source code
idList Man page
mainLongRaw Man page
mainTaxonomyRank Man page Source code
pairDomainPlotting Man page Source code
parseDomainInput Man page Source code
parseInfoProfile Man page Source code
ppTaxonomyMatrix Man page
ppTree Man page
processNcbiTaxonomy Man page Source code
profileWithTaxonomy Man page
qualitativeColours Man page Source code
rankIndexing Man page
rankList Man page
reduceProfile Man page Source code
runPhyloProfile Man page Source code
singleDomainPlotting Man page Source code
sortDomains Man page Source code
sortInputTaxa Man page Source code
sortTaxaFromTree Man page Source code
taxa2dist Man page Source code
taxonNamesReduced Man page
taxonomyMatrix Man page
taxonomyTableCreator Man page Source code
varDistTaxPlot Man page Source code
wideToLong Man page Source code
xmlParser Man page Source code
BIONF/PhyloProfile documentation built on July 21, 2020, 5:27 p.m.