reduceProfile: Reduce the filtered profile data into supertaxon level
In BIONF/PhyloProfile: PhyloProfile
View source: R/parsePhyloProfile.R
reduceProfile R Documentation
Reduce the filtered profile data into supertaxon level
Description
Reduce data of the processed phylogenetic profiles from input
taxonomy rank into supertaxon level (e.g. from species to phylum)
Usage
reduceProfile(filteredProfile)
Arguments
filteredProfile
dataframe contains the filtered profiles (see
?parseInfoProfile, ?filterProfileData and ?filteredProfile)
Value
A reduced dataframe contains only profile data for the selected
supertaxon rank. This dataframe contains only supertaxa and their value
(mVar1 & mVar2) for each gene.
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
See Also
parseInfoProfile for creating a full processed
profile dataframe, filterProfileData for filter processed
profile and filteredProfile for a demo filtered
profile dataframe
Examples
data("filteredProfile", package="PhyloProfile")
reduceProfile(filteredProfile)
BIONF/PhyloProfile documentation built on Dec. 18, 2024, 7:33 a.m.
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View source: R/parsePhyloProfile.R
| reduceProfile | R Documentation |
Reduce the filtered profile data into supertaxon level
Description
Reduce data of the processed phylogenetic profiles from input taxonomy rank into supertaxon level (e.g. from species to phylum)
Usage
reduceProfile(filteredProfile)
Arguments
filteredProfile |
dataframe contains the filtered profiles (see ?parseInfoProfile, ?filterProfileData and ?filteredProfile) |
Value
A reduced dataframe contains only profile data for the selected supertaxon rank. This dataframe contains only supertaxa and their value (mVar1 & mVar2) for each gene.
Author(s)
Vinh Tran tran@bio.uni-frankfurt.de
See Also
parseInfoProfile for creating a full processed
profile dataframe, filterProfileData for filter processed
profile and filteredProfile for a demo filtered
profile dataframe
Examples
data("filteredProfile", package="PhyloProfile")
reduceProfile(filteredProfile)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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