varDistTaxPlot: Create variable distribution comparison plot

In BIONF/PhyloProfile: PhyloProfile

Create variable distribution comparison plot

Description

Create variable distribution plots between 2 groups of taxa for a selected gene.

Usage

varDistTaxPlot(data, plotParameters)

Arguments

data	dataframe for plotting. Last column indicates what type of taxon group (in- or out-group). The first (or first 2) column contains values of the variables. See ?dataVarDistTaxGroup
plotParameters	plot parameters, including size of x-axis, y-axis, legend and title; position of legend ("right", "bottom" or "none"); mean/median point; names of in-group and out-group; and plot title. NOTE: Leave blank or NULL to use default values.

Value

Distribution plots as a grob (gtable) object. Use grid.draw to plot.

Author(s)

Vinh Tran [e-mail]

See Also

dataVarDistTaxGroup

Examples

data("mainLongRaw", package="PhyloProfile")
data <- mainLongRaw
inGroup <- c("ncbi9606", "ncbi10116")
variable <- colnames(data)[c(4, 5)]
plotDf <- dataVarDistTaxGroup(data, inGroup, "101621at6656", variable)
plotParameters <- list(
    "xSize" = 12,
    "ySize" = 12,
    "titleSize" = 15,
    "legendSize" = 12,
    "legendPosition" = "right",
    "mValue" = "mean",
    "inGroupName" = "In-group",
    "outGroupName" = "Out-group",
    "title" = "101621at6656"
)
g <- varDistTaxPlot(plotDf, plotParameters)
grid::grid.draw(g)

BIONF/PhyloProfile documentation built on Dec. 18, 2024, 7:33 a.m.