getInputTaxaName: Get NCBI taxon names for a selected list of taxa

In BIONF/PhyloProfile: PhyloProfile

Get NCBI taxon names for a selected list of taxa

Description

Get NCBI taxon names from "PhyloProfile/data/taxonNamesReduced.txt" for a list of input taxa

Usage

getInputTaxaName(rankName, taxonIDs = NULL, taxDB = NULL)

Arguments

rankName	taxonomy rank (e.g. "species","phylum",...)
taxonIDs	list of taxon IDs (e.g. ncbi1234). Default = NULL
taxDB	Path to the taxonomy DB files

Value

Data frame contains a list of full names, taxonomy ranks and parent IDs for the input taxa.

Author(s)

Vinh Tran [e-mail]

See Also

getInputTaxaID for getting input taxon IDs, getNameList for getting the full taxon name list

Examples

taxonIDs <- c("ncbi9606", "ncbi10116")
getInputTaxaName("species", taxonIDs)

BIONF/PhyloProfile documentation built on Dec. 18, 2024, 7:33 a.m.