modifyFeatureName: Modify feature names
In BIONF/PhyloProfile: PhyloProfile

modifyFeatureName

R Documentation

Modify feature names

Description

Simplify feature names (e.g. TM for transmembrane domain, LCR for low complexity regions, remove tool names from domain name) and add weight to feature names (if available)

Usage

modifyFeatureName(domainDf = NULL)

Arguments

domainDf

domain data as a dataframe object

Value

Dataframe contains simlified domain names in yLabel column

Author(s)

Vinh Tran tran@bio.uni-frankfurt.de

Examples

domainFile <- system.file(
    "extdata", "domainFiles/101621at6656.domains",
    package = "PhyloProfile", mustWork = TRUE
)
seedID <- "101621at6656"
domainDf <- parseDomainInput(seedID, domainFile, "file")
PhyloProfile:::modifyFeatureName(domainDf)

BIONF/PhyloProfile documentation built on Dec. 18, 2024, 7:33 a.m.