sortTaxaFromTree: Get sorted supertaxon list based on a rooted taxonomy tree

In BIONF/PhyloProfile: PhyloProfile

Get sorted supertaxon list based on a rooted taxonomy tree

Description

Get sorted supertaxon list based on a rooted taxonomy tree

Usage

sortTaxaFromTree(tree)

Arguments

tree	an "phylo" object for a rooted taxonomy tree

Value

A list of sorted taxa obtained the input taxonomy tree.

Author(s)

Vinh Tran [e-mail]

See Also

ppTaxonomyMatrix for a demo taxonomy matrix data

Examples

data("ppTaxonomyMatrix", package = "PhyloProfile")
# create taxonomy tree rooted by ncbi10090
tree <- createUnrootedTree(ppTaxonomyMatrix)
rootedTree <- ape::root(tree, outgroup = "ncbi10090", resolve.root = TRUE)
# get taxon list sorted from tree
sortTaxaFromTree(rootedTree)

BIONF/PhyloProfile documentation built on Aug. 3, 2024, 11:53 a.m.