API for CostaLab/sigurd
Single cell Genotyping Using RNA Data
| Global functions | |
|---|---|
| AllelFrequencyFoldChange | Man page Source code |
| AmpliconSupplementing | Man page Source code |
| CalculateAlleleFrequency | Man page Source code |
| CalculateAltReads | Man page Source code |
| CalculateConsensus | Man page Source code |
| CalculateCorrelationPValue | Man page Source code |
| CalculateCoverage | Man page Source code |
| CalculateFisherTestPValue | Man page Source code |
| CalculateForwardReads | Man page Source code |
| CalculateQuality | Man page Source code |
| CalculateRefReads | Man page Source code |
| CalculateReverseReads | Man page Source code |
| CalculateStrandCorrelation | Man page Source code |
| CallSupport | Man page Source code |
| ClonalDefinition | Man page Source code |
| ClonalDiversity | Man page Source code |
| CombineSEobjects | Man page Source code |
| Enrichment_FisherTest | Man page Source code |
| Filtering | Man page Source code |
| Filtering_VAF_Threshold | Man page Source code |
| GetCellInfoPerVariant | Man page Source code |
| GetVariantInfo | Man page Source code |
| HeatmapVoi | Man page Source code |
| LoadingMAEGATK_typewise | Man page Source code |
| LoadingMGATK_typewise | Man page Source code |
| LoadingRawMatrix_typewise | Man page Source code |
| LoadingVCF_typewise | Man page Source code |
| LoadingVarTrix_typewise | Man page Source code |
| Merging_SE_list | Man page Source code |
| RowWiseSplit | Man page Source code |
| SeparatingMatrixToList | Man page Source code |
| SetVariantInfo | Man page Source code |
| UMIQC | Man page Source code |
| UMI_seq | Man page Source code |
| VariantBurden | Man page Source code |
| VariantCloneSizeThresholding | Man page Source code |
| VariantCorrelationHeatmap | Man page Source code |
| VariantFisherTestHeatmap | Man page Source code |
| VariantQuantileThresholding_Combined | Man page Source code |
| VariantSelection_Group | Man page Source code |
| VariantSelection_Quantile | Man page Source code |
| VariantSelection_TopCells | Man page Source code |
| VariantSelection_VMR | Man page Source code |
| VariantSelection_VMR_Group | Man page Source code |
| VariantWiseCorrelation | Man page Source code |
| VariantWiseFisherTest | Man page Source code |
| char_to_numeric | Man page Source code |
| combine_NAMES | Man page Source code |
| combine_SparseMatrix | Man page Source code |
| computeAFMutMatrix | Man page Source code |
| getAltMatrix | Man page Source code |
| getMutMatrix | Man page Source code |
| getReadMatrix | Man page Source code |
| getRefMatrix | Man page Source code |
| get_consensus | Man page Source code |
| load_object | Man page Source code |
| save_object | Man page Source code |
| sdiv | Man page Source code |
