API for FunGeST/Palimpsest
Package
| Global functions | |
|---|---|
| %!in% | Man page |
| NMF_Extraction | Man page |
| RCircos.Get.Start.End.Locations_1 | Man page Source code |
| RCircos.Heatmap.Plot_1 | Man page Source code |
| RCircos.Link.Plot_1 | Man page Source code |
| add_DBS_cats_ToVCF | Man page Source code |
| add_ID_cats_ToVCF | Man page Source code |
| annotate_VCF | Man page Source code |
| bed2index | Man page Source code |
| chrTime_annot | Man page |
| chrTime_plot | Man page Source code |
| cit.chromString2num | Man page |
| cit.density | Man page Source code |
| cit.discretize | Man page Source code |
| cit.genomOrder | Man page Source code |
| cit.pangenomCoord | Man page Source code |
| cit.pangenomPlot | Man page Source code |
| cit.peaks | Man page Source code |
| cnaCCF_annot | Man page |
| cnaCCF_plots | Man page |
| compare_results | Man page Source code |
| count_triplets | Man page Source code |
| deconvolution_compare | Man page Source code |
| deconvolution_exposure | Man page Source code |
| deconvolution_fit | Man page |
| deconvolution_fit_SV | Man page |
| extract_dbs_from_vcf | Man page Source code |
| factoall | Man page |
| factochar | Man page Source code |
| generate_table | Man page Source code |
| indel_category_correct | Man page Source code |
| load2object | Man page |
| makeMutypeMatFromVcf | Man page |
| make_plot | Man page Source code |
| order_vcf | Man page Source code |
| palimpsest_CCFplot | Man page Source code |
| palimpsest_DissectSigs | Man page Source code |
| palimpsest_Fireworks | Man page Source code |
| palimpsest_addMutationContextToVR | Man page |
| palimpsest_addSVcategoriesToVcf | Man page |
| palimpsest_clonalitySigsCompare | Man page Source code |
| palimpsest_cnvProfile | Man page Source code |
| palimpsest_dfPosXSegm | Man page Source code |
| palimpsest_dfPosXSegm_2 | Man page |
| palimpsest_distCosine | Man page Source code Source code |
| palimpsest_input | Man page Source code |
| palimpsest_makeMutypeMatFromVcf | Man page Source code |
| palimpsest_plotTumorHistories | Man page Source code |
| plot.SV.sigs | Man page |
| plot6mutationSpectrumFromVcf | Man page Source code |
| plot96mutationSpectrumFromVcf | Man page Source code |
| plotStrandBias6types | Man page Source code |
| plotStrandBias96types | Man page Source code |
| plotSubstypeNumberPerSample | Man page Source code |
| plot_signatures | Man page |
| preprocessInput_sv | Man page |
| rainfallz_plot | Man page |
| signature_colour_generator | Man page Source code |
| signature_exposure_plot | Man page |
| signature_origins | Man page |
