systemBowtie2: Wrapper for bowtie2

Description Usage Arguments Author(s)

Description

Wrapper for bowtie2.

Usage

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## Default S3 method:
systemBowtie2(commandName="bowtie2", ...,
  system2ArgsList=list(stdout = TRUE, stderr = FALSE), .fake=FALSE, verbose=FALSE)

Arguments

commandName

A character string specifying the bowtie2 command.

...

Additional arguments specifying bowtie2 command line switches.

system2ArgsList

Named list of arguments to pass to internal system2 call.

.fake

If TRUE, the executable is not called.

verbose

See Verbose.

Author(s)

Taku Tokuyasu


HenrikBengtsson/aroma.seq documentation built on Feb. 15, 2021, 2:21 a.m.