systemBowtie2Build: Wrapper for bowtie2-build

In HenrikBengtsson/aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework

Description

Wrapper for bowtie2-build.

Usage

## Default S3 method:
systemBowtie2Build(commandName="bowtie2-build", ...,
  system2ArgsList=list(stdout = TRUE, stderr = FALSE), .fake=FALSE, verbose=FALSE)

Arguments

commandName	A character string specifying the bowtie2 build command.
...	Additional arguments specifying bowtie2-build command line switches.
system2ArgsList	Named list of arguments to pass to internal system2 call.
.fake	If TRUE, the executable is not called.
verbose	See Verbose.

Author(s)

Taku Tokuyasu

HenrikBengtsson/aroma.seq documentation built on Feb. 15, 2021, 2:21 a.m.