systemCufflinks: Calls the Cufflinks executable to perform isoform abundance...

In HenrikBengtsson/aroma.seq: High-Throughput Sequence Analysis using the Aroma Framework

Description

Calls the Cufflinks executable to perform isoform abundance estimation.

Usage

## Default S3 method:
systemCufflinks(commandName="cufflinks", ..., system2ArgsList=list(stdout = FALSE),
  .fake=FALSE, verbose=FALSE)

Arguments

commandName	A character string specifying the Cufflinks command.
...	Arguments specifying the Cufflinks command line.
system2ArgsList	Named list of arguments to pass to internal system2 call.
.fake	If TRUE, the executable is not called.
verbose	See Verbose.

Author(s)

Taku Tokuyasu

HenrikBengtsson/aroma.seq documentation built on Feb. 15, 2021, 2:21 a.m.