systemCufflinks: Calls the Cufflinks executable to perform isoform abundance...

Description Usage Arguments Author(s)

Description

Calls the Cufflinks executable to perform isoform abundance estimation.

Usage

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## Default S3 method:
systemCufflinks(commandName="cufflinks", ..., system2ArgsList=list(stdout = FALSE),
  .fake=FALSE, verbose=FALSE)

Arguments

commandName

A character string specifying the Cufflinks command.

...

Arguments specifying the Cufflinks command line.

system2ArgsList

Named list of arguments to pass to internal system2 call.

.fake

If TRUE, the executable is not called.

verbose

See Verbose.

Author(s)

Taku Tokuyasu


HenrikBengtsson/aroma.seq documentation built on Feb. 15, 2021, 2:21 a.m.