Files in RyanYip-Kat/yipCat
Some function like ArchR style in Seurat Object
.Rbuildignore
.Rhistory
.Rproj.user/BA4B92C9/cpp-definition-cache
.Rproj.user/BA4B92C9/pcs/files-pane.pper
.Rproj.user/BA4B92C9/pcs/source-pane.pper
.Rproj.user/BA4B92C9/pcs/windowlayoutstate.pper
.Rproj.user/BA4B92C9/pcs/workbench-pane.pper
.Rproj.user/BA4B92C9/rmd-outputs
.Rproj.user/BA4B92C9/saved_source_markers
.Rproj.user/BA4B92C9/sources/per/t/7743830E
.Rproj.user/BA4B92C9/sources/per/t/7743830E-contents
.Rproj.user/BA4B92C9/sources/per/t/92B5938E
.Rproj.user/BA4B92C9/sources/per/t/92B5938E-contents
.Rproj.user/BA4B92C9/sources/per/t/BA4D3B76
.Rproj.user/BA4B92C9/sources/per/t/BA4D3B76-contents
.Rproj.user/BA4B92C9/sources/prop/1106BCF5
.Rproj.user/BA4B92C9/sources/prop/BC4C5BDE
.Rproj.user/BA4B92C9/sources/prop/EE108ACF
.Rproj.user/BA4B92C9/sources/prop/INDEX
.Rproj.user/EE78A7B3/cpp-definition-cache
.Rproj.user/EE78A7B3/pcs/debug-breakpoints.pper
.Rproj.user/EE78A7B3/pcs/files-pane.pper
.Rproj.user/EE78A7B3/pcs/source-pane.pper
.Rproj.user/EE78A7B3/pcs/windowlayoutstate.pper
.Rproj.user/EE78A7B3/pcs/workbench-pane.pper
.Rproj.user/EE78A7B3/persistent-state
.Rproj.user/EE78A7B3/rmd-outputs
.Rproj.user/EE78A7B3/saved_source_markers
.Rproj.user/EE78A7B3/sources/per/t/8CB89EC3
.Rproj.user/EE78A7B3/sources/per/t/8CB89EC3-contents
.Rproj.user/EE78A7B3/sources/per/t/8DE1655A
.Rproj.user/EE78A7B3/sources/per/t/8DE1655A-contents
.Rproj.user/EE78A7B3/sources/per/t/E02C69F1
.Rproj.user/EE78A7B3/sources/per/t/E02C69F1-contents
.Rproj.user/EE78A7B3/sources/per/t/E236895D
.Rproj.user/EE78A7B3/sources/per/t/E236895D-contents
.Rproj.user/EE78A7B3/sources/per/t/FBE839E4
.Rproj.user/EE78A7B3/sources/per/t/FBE839E4-contents
.Rproj.user/EE78A7B3/sources/prop/112C33EE
.Rproj.user/EE78A7B3/sources/prop/56E1C615
.Rproj.user/EE78A7B3/sources/prop/66F99DAF
.Rproj.user/EE78A7B3/sources/prop/7EAAD1D2
.Rproj.user/EE78A7B3/sources/prop/8068D78B
.Rproj.user/EE78A7B3/sources/prop/88F4C885
.Rproj.user/EE78A7B3/sources/prop/920910C4
.Rproj.user/EE78A7B3/sources/prop/A775D508
.Rproj.user/EE78A7B3/sources/prop/AF060010
.Rproj.user/EE78A7B3/sources/prop/B9D84543
.Rproj.user/EE78A7B3/sources/prop/D2902E75
.Rproj.user/EE78A7B3/sources/prop/D7467A10
.Rproj.user/EE78A7B3/sources/prop/D953AC3F
.Rproj.user/EE78A7B3/sources/prop/DB85C76E
.Rproj.user/EE78A7B3/sources/prop/E411DDF0
.Rproj.user/EE78A7B3/sources/prop/E41C7D69
.Rproj.user/EE78A7B3/sources/prop/F8313D8C
.Rproj.user/EE78A7B3/sources/prop/INDEX
.Rproj.user/shared/notebooks/patch-chunk-names
.Rproj.user/shared/notebooks/paths
DESCRIPTION
NAMESPACE
R/DEplot.R
R/GgplotTools.R
R/Heatmap.R
R/ImputeWeight.R
R/LSI.R
R/MetascapeUtils.R
R/ROGUE.R
R/Trajectory.R
R/agingscore.R
R/cellphonedb.R
R/cellranger.R
R/cytof.R
R/doubletScore.R
R/packagegename-data.R
R/plotEmbedding.R
R/plotGroups.R
R/plotter.R
R/utils.R
README.md
data/config.RData
inst/extdata/Doublet-Summary_page-0002.jpg
inst/extdata/cpbdDotplot_page-0001.jpg
inst/extdata/cytofConfig.csv
inst/extdata/cytofSample.csv
inst/extdata/cytofTo10x.sh
inst/extdata/doheatmap_page-0001.jpg
inst/extdata/doublet.jpg
inst/extdata/impute-S100A9_page-0001.jpg
inst/extdata/interaction.csv
inst/extdata/metascapeData.csv
inst/extdata/notImpute-S100A9_page-0001.jpg
inst/extdata/testTrajectoyHeatmap_page-0001.jpg
inst/extdata/violin_page-0001.jpg
inst/extdata/volcano.png
man/ArchRHeatmap.Rd
man/ArchRPalettes.Rd
man/CPDBDotData.Rd
man/CPDBDotplot.Rd
man/CPDBHeatmapData.Rd
man/CPDBHeatmaps.Rd
man/CalculateRogue.Rd
man/CustomInteractionScore.Rd
man/Cytof2Seurat.Rd
man/DAPlot.Rd
man/DetermineK.Rd
man/DoLikeArchRHeatmap.Rd
man/EmbPlot.Rd
man/Entropy.Rd
man/GgPlot.Rd
man/ImputeWeights.Rd
man/MyimputeMatrix.Rd
man/MyplotEmbedding.Rd
man/MyplotGroups.Rd
man/MyplotPDF.Rd
man/SE_fun.Rd
man/SEplot.Rd
man/addSeuratTrajectory.Rd
man/ageScore.Rd
man/calDoubletScores.Rd
man/centerRollMean.Rd
man/config.Rd
man/deDF.Rd
man/dot-batchlapply.Rd
man/dot-computeKNN.Rd
man/dot-computeLSI.Rd
man/dot-projectLSI.Rd
man/dot-safelapply.Rd
man/dot-tempfile.Rd
man/dot-transform10XH5.Rd
man/dot-writeCode.Rd
man/ent.toli.Rd
man/entropy_fit.Rd
man/exportCellPhoneDB.Rd
man/exportEmbCol.Rd
man/findCellPhoneDB.Rd
man/fixPlotSize.Rd
man/generateCloupe.Rd
man/getDoubletsDF.Rd
man/getGroupPval.Rd
man/getImputeWeight.Rd
man/getSeuratTrajectory.Rd
man/ggAlignPlots.Rd
man/ggGroup.Rd
man/ggHex.Rd
man/ggOneToOne.Rd
man/ggPoint.Rd
man/installCellphonedb.Rd
man/isDiscrete.Rd
man/makedir.Rd
man/matr.filter.Rd
man/mergeParams.Rd
man/metascapeBarPlot.Rd
man/paletteContinuous.Rd
man/plotSeuratTrajectory.Rd
man/quantileCut.Rd
man/rogue.Rd
man/rogue.boxplot.Rd
man/scMatrix2CellRangerH5.Rd
man/theme_ArchR.Rd
man/wrapperROGUE.Rd
yipCat.Rproj
yipCat_1.0.3.tar.gz
yipCat_1.0.5.tar.gz
