OLD_calculateInfiltrationDensity: Calculate density of set of markers (marker combinations)

In caitlinjones/halo: Development version of the package 'halo', which analyzes and visualizes Halo data

Description

Based on pre-computed areas and band assignments (may be one band, depending on how area was calculated), calculate densities for a set of markers in each band

Usage

OLD_calculateInfiltrationDensity(areas, bandAssignments, markerSet,
  funcMarker = NULL, sortByMarker = NULL, writeCSVfiles = TRUE,
  outDir = NULL, statsByBand = FALSE)

Arguments

areas	tibble containing area by band
bandAssignments	tibble containing band assignments for each cell
markerSet	vector of markers for which density should be calculated
funcMarker	functional marker for which to calculate density; default=NULL
sortByMarker	sort data by density of this marker; default=NULL
writeCSVfiles	logical; write density to csv files; default=FALSE
outDir	logical; if writeCSVfiles is TRUE, write them to this directory
statsByBand	logical; calculate density by interval bands

Value

tibble containing densities for each marker type

caitlinjones/halo documentation built on May 7, 2019, 8 a.m.