getHaloExclusions: Remove points from data set that fall inside exclusion...

In caitlinjones/halo: Development version of the package 'halo', which analyzes and visualizes Halo data

Description

Read Halo boundaries annotations file and remove from data set any cells that fall inside the exclusion regions

Usage

getHaloExclusions(fov, dd, excType, haloAnnotations = NULL, aFile = NULL,
  exc = NULL, boundaryColors = NULL, boundaryReassignmentFile = NULL)

Arguments

aFile	Halo boundaries annotation file in XML format; if NULL, must provide the list of excluded region tables as returned by cleanBoundaries()
ds	tibble containing at minimum, Sample, SPOT, UUID, X, Y, Marker, Value
excB	a list of excluded region tables as returned by cleanBoundaries; if NULL, must provide the original Halo annotations file in XML format

Value

tibble filtered to remove points that fall inside exclusion boundaries

caitlinjones/halo documentation built on May 7, 2019, 8 a.m.