getTotalDensityPlots: Build bar plot for total cell type density

In caitlinjones/halo: Development version of the package 'halo', which analyzes and visualizes Halo data

Description

Build bar plot for total cell type density

Usage

getTotalDensityPlots(dat, markerList, plotPer = "markerSet",
  funcMarker = NULL, funcPosColor = "grey35", funcNegColor = "grey50",
  sampleColor = "#f16913", sampleColorDark = "#80380A",
  consistentYScaling = TRUE)

Arguments

dat	tibble containing all info needed for plotting [ TO DO: FILL IN EXACTLY WHAT'S NEEDED ]
plotPer	generate plot per ['markerSet'|'marker'|'sample'|'sample+marker]; default='markerSet'
funcMarker	marker to be indicated as either positive or negative for each cell type
funcPosColor	hex color indicating functional marker is positive in that cell type
funcNegColor	hex color indicating functional marker is negative in that cell type
sampleColor	vector of colors named by the sample which it will represent; this color will only appear on the median bars
sampleColorDark	vector of colors named by sample, to represent density of cells that are positive for the functional marker, if one is given
consistentYScaling	logical; when onePanel=FALSE, set this parameter to FALSE in order to scale separate plots individually; default=TRUE

Value

list of ggplots to be printed

caitlinjones/halo documentation built on May 7, 2019, 8 a.m.