interpretMarkerCombos: Interpret marker combinations

In caitlinjones/halo: Development version of the package 'halo', which analyzes and visualizes Halo data

Description

Given a file of cell types defined by certain marker combinations (format in docs), assign cell types to each combination in a marker combination counts file

Usage

interpretMarkerCombos(markerComboCts, allCellTypes, outFile = NULL)

Arguments

outFile	if given, markerComboCounts table with interpretations added will be printed to this file
markerComboCounts	table generated by markerComboCounts()
cellTypesFile	*.xlsx file defining cell types based on known marker combination (format in docs)
unreasonableCombosFile	*.xlsx file containing a matrix indicating both known unreasonable pairwise marker combinations and also "unknown" pairwise marker combinations

caitlinjones/halo documentation built on May 7, 2019, 8 a.m.