markerComboXLSX: Generate XLSX file of all marker combinations represented in...

In caitlinjones/halo: Development version of the package 'halo', which analyzes and visualizes Halo data

Description

XLSX file generated will contain a detailed count sheet and a summary sheet for ALL data, incluing all samples, and for each sample. Each sheet includes marker count, percentage and cumulative percentage of all cells that contain each marker combination, and interpretation or cell type of each marker combination

Usage

markerComboXLSX(dataFiles, markerFile, cellTypesFile, unreasonableCombosFile,
  outFile)

Arguments

dataFiles	vector of *.rda files containing Halo data
markerFile	file containing a single identity marker on each line
cellTypesFile	a *.xlsx file containing sheets for Simple and Complex marker combinations that identify certain cell types (format described in docs)
unreasonableCombosFile	a *.xlsx file containing a matrix that indicated invalid or "unknown" pairwise combinations of markers in markerFile (format described in docs)
outFile	name of *.xlsx file to write final tables

caitlinjones/halo documentation built on May 7, 2019, 8 a.m.