View source: R/marker_combo_table.R
XLSX file generated will contain a detailed count sheet and a summary sheet for ALL data, incluing all samples, and for each sample. Each sheet includes marker count, percentage and cumulative percentage of all cells that contain each marker combination, and interpretation or cell type of each marker combination
1 2 | markerComboXLSX(dataFiles, markerFile, cellTypesFile, unreasonableCombosFile,
outFile)
|
dataFiles |
vector of *.rda files containing Halo data |
markerFile |
file containing a single identity marker on each line |
cellTypesFile |
a *.xlsx file containing sheets for Simple and Complex marker combinations that identify certain cell types (format described in docs) |
unreasonableCombosFile |
a *.xlsx file containing a matrix that indicated invalid or "unknown" pairwise combinations of markers in markerFile (format described in docs) |
outFile |
name of *.xlsx file to write final tables |
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