printDensityPlots: Print density plots

In caitlinjones/halo: Development version of the package 'halo', which analyzes and visualizes Halo data

Description

Print density plots

Usage

printDensityPlots(den, bandWidth = NULL, config,
  yScaleConsistency = "population", absoluteDensity = TRUE,
  densityPercentage = TRUE, byFOV = TRUE, summarize = TRUE,
  stacked = TRUE, sampleOrder = NULL, separateLegend = TRUE)

Arguments

den	tibble containing densities for all markers to be plotted
bandWidth	if plotting by distance intervals from infiltration boundary, this is the size of each interval
config	configuration of plots (already parsed)
yScaleConsistency	level on which y-scales should be the same; choices: ["byPopulation"|"all"|"markerSet"]
absoluteDensity	logical; print plots of absolute density values; default=TRUE
densityPercentage	logical; print plots of density percentage values; default=TRUE
byFOV	logical; print plots of each FOV (all FOV on one panel); default=TRUE
summarize	logical; print summary plots, showing density of ALL FOV together; default=TRUE
stacked	logical; for plots with all exclusive markers, print stacked bar plots; default=TRUE

Value

nothing

caitlinjones/halo documentation built on May 7, 2019, 8 a.m.