Description Usage Arguments Value
View source: R/melanoma_spatial.R
Summarize density data by cell type definition
1 | summarizeFOVDataByCellTypeDefinition(den, config, areas, plotConfigFile)
|
den |
density table |
config |
parsed marker config of info for each cell type definition including marker combinations (result of getMarkerConfig()) |
areas |
fovAreas |
plotConfigFile |
full path to file containing plot options including colors for cell types |
list of two items: den=density table, config=updated config to represent summary info
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