summarizeFOVDataByCellTypeDefinition: Summarize density data by cell type definition
In caitlinjones/halo: Development version of the package 'halo', which analyzes and visualizes Halo data
Description
Usage
Arguments
Value
View source: R/melanoma_spatial.R
Description
Summarize density data by cell type definition
Usage
1
summarizeFOVDataByCellTypeDefinition(den, config, areas, plotConfigFile)
Arguments
den
density table
config
parsed marker config of info for each cell type definition including marker
combinations (result of getMarkerConfig())
areas
fovAreas
plotConfigFile
full path to file containing plot options including colors for cell types
Value
list of two items: den=density table, config=updated config to represent summary info
caitlinjones/halo documentation built on May 7, 2019, 8 a.m.
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Description Usage Arguments Value
View source: R/melanoma_spatial.R
Description
Summarize density data by cell type definition
Usage
1 | summarizeFOVDataByCellTypeDefinition(den, config, areas, plotConfigFile)
|
Arguments
den |
density table |
config |
parsed marker config of info for each cell type definition including marker combinations (result of getMarkerConfig()) |
areas |
fovAreas |
plotConfigFile |
full path to file containing plot options including colors for cell types |
Value
list of two items: den=density table, config=updated config to represent summary info
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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