API for egmg726/crisscrosslinker
An R package for protein interaction analysis
| Global functions | |
|---|---|
| blast.menu | Man page Source code |
| blast.menuOptions | Man page Source code |
| bs_output_repeats_pdb | Man page |
| bs_output_repeats_pdb2 | Man page |
| bs_output_repeats_uniprot | Man page |
| check_and_change_protein_name | Source code |
| check_download_read_pdb | Man page Source code |
| color.pymol | Man page Source code |
| consolidate_resno_and_resid | Man page Source code |
| count_input_eluate_in_supp_df | Source code |
| create_features_subset | Source code |
| display_preferred_pdb_structure_menu | Man page Source code |
| do_sr_chain_loop | Man page Source code |
| edit_features_subset | Source code |
| extract_protein_name_and_peptide_num | Source code |
| fasta.combine | Man page Source code |
| filter_xlink_df_by_protein_names | Source code |
| find_and_generate_missing_aa_2d_structure | Source code |
| find_and_generate_missing_aa_2d_structure_all | Source code |
| find_pdb_files_from_fasta_and_dir | Source code |
| find_pdb_match_and_get_info | Source code |
| firstup | Man page Source code |
| generate_2d_pdb_file | Man page Source code |
| generate_2d_pdb_file_single_atom | Source code |
| generate_pdb_lists_and_files_from_fasta | Source code |
| generate_pdb_lists_from_pdb_csv | Man page Source code |
| generate_random_lysine_distances_in_pdb | Source code |
| get_category_colors_from_input_file | Source code |
| get_genbank_start_lines | Source code |
| get_list_of_duplicated_row_matches | Source code |
| get_missing_amino_acids | Man page Source code |
| get_new_pwa_score | Source code |
| get_pdb_info | Man page Source code |
| get_pdb_structure_from_protein_pos | Source code |
| get_pwa_ranges | Man page Source code |
| get_pwa_strings | Man page Source code |
| get_resno_and_resid | Man page Source code |
| get_uniprot_info_from_proteins_api | Man page Source code |
| get_vector_of_distances_by_pos_freq | Man page Source code |
| get_xyz_coordinates_pdb | Man page Source code |
| get_xyz_min_max | Man page Source code |
| go_through_menu_loops | Man page Source code |
| is.sequential | Man page |
| load_plink_file | Source code |
| load_proxl_data | Man page Source code |
| make_binding_site_df | Man page Source code |
| make_binding_site_rows_for_supp_df | Man page Source code |
| make_input_and_eluate_dfs_from_pi_list | Source code |
| make_intensity_output_df | Man page Source code |
| make_list_of_all_pdbs | Source code |
| make_list_of_index_matches | Source code |
| make_pdb_files_from_fasta | Source code |
| make_pdb_menu_options | Man page Source code |
| make_plink2_master_list | Man page Source code |
| make_proteins_and_intensity_list_from_pipeline_output | Man page Source code |
| make_renumbered_pdb_vectors | Man page Source code |
| make_start_end_pdb_df_output | Source code |
| make_start_end_pdb_df_output2 | Man page Source code |
| make_start_end_pdb_list | Source code |
| make_uv_xlms_visualization | Man page Source code |
| match_sequence_to_pdb_and_chain | Source code |
| my.file.rename | Source code |
| ppi.alignPDB | Man page Source code |
| ppi.analyze | Man page Source code |
| ppi.colnamesConvert | Source code |
| ppi.combineData | Man page Source code |
| ppi.distAnalysis | Man page Source code |
| ppi.filter | Source code |
| ppi.freqCount | Man page Source code |
| ppi.loadData | Man page Source code |
| ppi.matchPDB | Man page Source code |
| ppi.matchPDB2 | Man page Source code |
| ppi.matchPDB3 | Man page Source code |
| ppi.matchUniprot | Man page Source code |
| ppi.pymol | Man page Source code |
| ppi.pymol2 | Source code |
| ppi.xinet | Man page Source code |
| pymol_color_table | Man page |
| quick_pwa_from_pdb | Man page Source code |
| quick_resno_and_resid | Man page Source code |
| rbd.alignBS | Man page Source code |
| rbd.alignBS2 | Man page Source code |
| rbd.find_new_pattern | Source code |
| rbd.freqVector | Man page Source code |
| rbd.getBSfromDF | Man page Source code |
| rbd.getBSfromIET | Man page Source code |
| rbd.getBindingSeq | Man page Source code |
| rbd.getBindingSeq3 | Man page Source code |
| rbd.makeIEPlot | Man page Source code |
| rbd.makeIETable | Man page Source code |
| rbd.makeSeqHitList | Man page Source code |
| rbd.menuDBSearch | Man page Source code |
| rbd.pymol | Man page Source code |
| rbd.xinet | Man page Source code |
| renumber_and_identify_missing_aa | Man page Source code |
| renumber_binding_site_df_from_uniprot_fasta | Man page Source code |
| renumber_feature_subset | Source code |
| renumber_xinet_from_uniprot_fasta | Source code |
| save_plot_as_png | Source code |
| split_and_match_peptides | Source code |
| split_sequences | Man page Source code |
| split_sequences2 | Man page Source code |
| strcount | Source code |
| substrRight | Source code |
| uniprot.PDBmap | Man page Source code |
| uniprot.fasta | Man page Source code |
| write.pymol | Source code |
| write_binding_sequence_csv | Source code |
| write_pymol_file | Source code |
| xlink.df.filt.pdb | Man page |
| xlink.df.uniprot | Man page |
