| AlignImages |
Man page
|
| AlignImages.Seurat |
Man page
|
| AlignImages.Staffli |
Man page
|
| ColorBlender |
Man page
|
| ConvertGeneNames |
Man page
|
| CorSpatialDims |
Man page
|
| CorSpatialGenes |
Man page
|
| Create3DStack |
Man page
|
| CreateStaffliObject |
Man page
|
| Create_annotation |
Man page
|
| CropImages |
Man page
|
| CropImages.Seurat |
Man page
|
| CropImages.Staffli |
Man page
|
| CustomFacetWrap |
Man page
|
| DimOverlay |
Man page
|
| DimPlot3D |
Man page
|
| EdgeMask |
Man page
|
| FactorGeneLoadingPlot |
Man page
|
| FeatureOverlay |
Man page
|
| FeaturePlot3D |
Man page
|
| FilterObjects |
Man page
Source code
|
| GetCoords |
Man page
Source code
|
| GetCropWindows |
Man page
|
| GetSpatNet |
Man page
|
| GetStaffli |
Man page
|
| GetStaffli,Seurat,Seurat-method |
Man page
|
| GetStaffli,Seurat-method |
Man page
|
| HSVOverlay |
Man page
|
| HSVPlot |
Man page
|
| HSVPlot3D |
Man page
|
| ImagePlot |
Man page
|
| InputFromTable |
Man page
|
| LoadImages |
Man page
|
| LoadImages.Seurat |
Man page
|
| LoadImages.Staffli |
Man page
|
| ManualAlignImages |
Man page
|
| ManualAlignImages.Seurat |
Man page
|
| ManualAlignImages.Staffli |
Man page
|
| ManualAnnotation |
Man page
|
| MaskImages |
Man page
|
| MaskImages.Seurat |
Man page
|
| MaskImages.Staffli |
Man page
|
| MergeSTData |
Man page
|
| Merger |
Man page
Source code
|
| RegionNeighbours |
Man page
|
| RunNMF |
Man page
|
| ST.DimPlot |
Man page
|
| ST.FeaturePlot |
Man page
|
| ST.ImagePlot |
Man page
|
| ST.rgbDimPlot |
Man page
Source code
|
| STPlot |
Man page
|
| STutility |
Man page
|
| STutility-package |
Man page
|
| SetQuantile |
Man page
|
| SmoothPlot |
Man page
|
| Staffli |
Man page
|
| Staffli-class |
Man page
|
| SubsetSTData |
Man page
|
| SummarizeAssocFeatures |
Man page
|
| SwitchResolution |
Man page
|
| Warp |
Man page
|
| WarpImages |
Man page
|
| WarpImages.Seurat |
Man page
|
| WarpImages.Staffli |
Man page
|
| [,Staffli,ANY,ANY,ANY-method |
Man page
|
| [<-,Staffli,ANY,ANY,ANY-method |
Man page
|
| [[,Staffli,ANY,ANY-method |
Man page
|
| [[<-,Staffli,ANY,ANY-method |
Man page
|
| `%||%` |
Source code
Source code
|
| `[<-`,Staffli,Staffli-method |
Man page
|
| `[[<-`,Staffli,Staffli-method |
Man page
|
| `[[`,Staffli,Staffli-method |
Man page
|
| `[`,Staffli,Staffli-method |
Man page
|
| add.margins |
Man page
|
| apply.transform |
Man page
|
| combine.tr |
Man page
|
| create.array.from.feature.vals |
Man page
|
| create.cols.from.array |
Man page
|
| cscale |
Man page
|
| dark_theme |
Man page
Source code
|
| draw_scalebar |
Man page
|
| facet_wrap_custom |
Man page
|
| feature.scaler |
Man page
|
| find.optimal.transform |
Man page
|
| g_legend |
Man page
|
| generate.map.affine |
Man page
|
| generate.map.rot |
Man page
|
| get.edges |
Man page
|
| get.edges.Seurat |
Man page
|
| get.edges.Staffli |
Man page
|
| getExtension |
Man page
|
| grid.from.staffli |
Man page
|
| ica_init |
Man page
|
| icpmat |
Man page
|
| iminfo |
Man page
|
| iminfo,Staffli,Staffli-method |
Man page
|
| iminfo,Staffli-method |
Man page
|
| interpolate_2D_data |
Man page
|
| labelRGB |
Man page
|
| make.plot |
Man page
|
| mirror |
Man page
|
| names,Staffli,Staffli-method |
Man page
|
| names,Staffli-method |
Man page
|
| obtain.array.coords |
Man page
|
| palette.select |
Man page
Source code
|
| parse.spot.file |
Man page
Source code
|
| plot,Staffli,Staffli-method |
Man page
|
| plot,Staffli,missing-method |
Man page
|
| prep.sb |
Man page
|
| qc.scatter |
Man page
Source code
|
| qcGenes |
Man page
Source code
|
| qcSamples |
Man page
Source code
|
| qcSpots |
Man page
Source code
|
| rasterize_scatter |
Man page
|
| rasterlists |
Man page
|
| rasterlists,Seurat,Seurat-method |
Man page
|
| rasterlists,Seurat-method |
Man page
|
| rasterlists,Staffli,Staffli-method |
Man page
|
| rasterlists,Staffli-method |
Man page
|
| rigid.refl |
Man page
|
| rigid.rot |
Man page
|
| rigid.stretch |
Man page
|
| rigid.transf |
Man page
|
| rigid.transl |
Man page
|
| rnmf |
Man page
|
| rotate |
Man page
|
| samplenames |
Man page
|
| samplenames,Seurat,Seurat-method |
Man page
|
| samplenames,Seurat-method |
Man page
|
| samplenames,Staffli,Staffli-method |
Man page
|
| samplenames,Staffli-method |
Man page
|
| scale_override |
Man page
|
| scaled.imdims |
Man page
|
| scaled.imdims,Staffli,Staffli-method |
Man page
|
| scaled.imdims,Staffli-method |
Man page
|
| scatter_HE |
Man page
|
| show,Staffli,Staffli-method |
Man page
|
| show,Staffli-method |
Man page
|
| sleepy |
Man page
Source code
|
| slic |
Man page
|
| spatial_dim_plot |
Man page
|
| spatial_feature_plot |
Man page
|
| spatial_hsv_plot |
Man page
|
| st.load.matrix |
Man page
|
| stretch |
Man page
Source code
|
| translate |
Man page
|
