R/classes.R

In mariavica/mircomb: An R package for analyzing miRNA-mRNA interactions

setClass("corObject",representation(
	dat.miRNA="matrix",
	dat.mRNA="matrix",
	pheno.miRNA="data.frame",
	pheno.mRNA="data.frame",
	cor="matrix",
	pval="matrix",
	net="data.frame",
	diffexp.miRNA="data.frame",
	diffexp.mRNA="data.frame",
	sig.miRNA="vector",
	sig.mRNA="vector",
	GO.results="list",
	info="list"),
prototype(
	dat.miRNA=matrix(),
	dat.mRNA=matrix(),
	pheno.miRNA=data.frame(),
	pheno.mRNA=data.frame(),
	cor=matrix(),
	pval=matrix(),
	net=data.frame(),
	diffexp.miRNA=data.frame(),
	diffexp.mRNA=data.frame(),
	sig.miRNA=vector(),
	sig.mRNA=vector(),
	GO.results=list(),
	info=list())
)