processData: processData function generates pathway RampId frequency (gene...

Description Usage Arguments Value

View source: R/processNewRamp.R

Description

processData function generates pathway RampId frequency (gene or metabolite) based on pathway source (hmdb,kegg,reactome,wiki)

Usage

1
2
processData(conpass, dbname = "ramp", username = "root",
  host = "localhost")

Arguments

conpass

a string that specifies password for database connection

dbname

a string that specifies database name of MySQL database

username

a string that specifies name of MySQL database

host

a string that specifes host for database connection

Value

R object (FT_data.Rdata) with dataframes (hmdb_metab,hmdb_gene,kegg_gene,kegg_metab,reactome_gene,reactome_metab,wiki_gene,wiki_metab)


ncats/RaMP-DB documentation built on Nov. 21, 2020, 7:41 p.m.